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Coverage and missing 'major' SNPs

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  • Coverage and missing 'major' SNPs

    An initial look at 2 BED files has confirmed that the coverage did not include R1b-Z301. Is a list available of known haplogroup defining SNPs that are not covered by Big-Y?

  • #2
    Hi,

    No. It may vary from one BIG Y to the next.
    Originally posted by wkauffman View Post
    An initial look at 2 BED files has confirmed that the coverage did not include R1b-Z301. Is a list available of known haplogroup defining SNPs that are not covered by Big-Y?

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    • #3
      While I understand how NGS testing results in a slightly different start & stop locations for each individual, it was my understanding that overall, only certain mappable regions of the Y were going to be covered, and other mappable regions were not going to be covered.

      I would think with the above in mind, there would be a way of knowing in advance which SNPs would not be appearing in anyone's results.

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