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Formula for calculating Neanderthal Percentage?

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  • MFWare
    replied
    You must take Neanderthal ancestry with a grain of salt--maybe a teaspoon of salt. I have too assessments of my Neanderthal ancestry. 23andMe has me at 2%. Geno 2.0 has me at 2.8%--40% higher than the 23andMe result.

    If someone has a formula, then the result has three possibilities: 1) it agrees with 23andMe; 2) it agrees with Geno 2.0; 3) it agrees with neither. In either case, you have a disagreement with at least commercial assessment. How do you arbitrate the disagreement?

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  • ahernandez
    replied
    Hah, that's what I'm trying to avoid! Seems like a shame to pay 99 bucks when I can tease of the info from the raw data.

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  • thormalen
    replied
    Take the 23&Me test...only $99 Ha

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  • ahernandez
    started a topic Formula for calculating Neanderthal Percentage?

    Formula for calculating Neanderthal Percentage?

    Does anyone know the formula for calculating an individual's Neanderthal percentage?

    I tried to run my raw data through Interpretome and it didn't take the FTDNA file. So I ran it through Promethease and out of the 42 SNPs I got 22 (see below), that seems like more than the average of 7 to 10 SNPs for Europeans, but it doesn't give me the %. So given my result, how do I calculate the estimated percentage of Neanderthal DNA I have?

    rs10494778(A;G)
    Frequency: 2.7%
    References:0

    rs4794826(A;G)
    Frequency: 15.0%
    References:0

    rs1330692(A;G)
    Frequency: 22.1%
    References:0

    rs16845098(C;T)
    Frequency: 38.9%
    References:0

    rs6670818(A;G)
    Frequency: 40.2%
    References:0

    rs10800485(C;T)
    Frequency: 41.6%
    References:1

    rs10852939(C;T)
    Frequency: 44.2%
    References:0

    rs17254301(C;C)
    Frequency: 65.5%
    References:0

    rs17745316(G;G)
    Frequency: 73.5%
    References:0

    rs10484939(A;A)
    Frequency: 80.0%
    References:0

    rs17430552(T;T)
    Frequency: 81.2%
    References:0

    rs11252810(C;C)
    Frequency: 82.3%
    References:0

    rs963660(G;G)
    Frequency: 82.3%
    References:0

    rs7536180(C;C)
    Frequency: 83.2%
    References:0

    rs11815066(G;G)
    Frequency: 85.8%
    References:0

    rs332951(C;C)
    Frequency: 86.2%
    References:0

    rs16918958(C;C)
    Frequency: 88.5%
    References:0

    rs12416000(G;G)
    Magnitude: 0
    Frequency: 78.8%
    Repute:Good
    References:0


    rs17503834(T;T)
    Magnitude: 0
    Frequency: 80.5%
    Repute:Good
    References:0

    rs16965666(T;T)
    Magnitude: 0
    Frequency: 88.5%
    Repute:Good
    References:0

    rs9609421(A;A)
    Magnitude: 0
    Frequency: 95.6%
    Repute:Good
    References:0

    rs16917040(T;T)
    Magnitude: 0
    Frequency: 100.0%
    Repute:Good
    References:0
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