Autosomal Segment Analyzer

[1798]

http://www.y-str.org/2013/08/autosom...-analyzer.html

I found this very useful for looking at specific or rare autosomal alleles in my dna.

[1798]

http://www.y-str.org/2013/08/autosom...-analyzer.html

I found this very useful for looking at specific or rare autosomal alleles in my dna.

To Felix
Does it matter whether a genotype is TG instead of GT or TC instead of CT? The autosomal-segment-analyzer doesn't display some of these types in the pie chart.

[1798]

Me, Son, LBK
GC 179, 181, 542
TA 107, 121, 326
AT 103, 101, 326
TC 82,981, 81990, 54,498
CT 0, 0, 56,795
AG 82,867, 82,211, 54,245
GA 0, 0, 56,516
TG 18,914 18,756 12,477
GT 0, 0, 12,787
AC 19,103, 18,743, 12,339
CA 0, 0, 12,890
GG 130,797,130,548,176,624
AA 112,329,112,612,157,793
TT 112,066,112,473,156,793
CC 131,411,131,312,177,411

My Son and I don't have any SNPs with CT,GA,GT or CA genotypes. Does anyone know what the reason is?

[felix]

To Felix
Does it matter whether a genotype is TG instead of GT or TC instead of CT? The autosomal-segment-analyzer doesn't display some of these types in the pie chart.

The comparing algorithm treats TG same as GT and it doesn't matter. The pie chart is just for reference frequency based on OpenSNP frequency data represented as such.

[1798]

Me, Son, LBK
GC 179, 181, 542
TA 107, 121, 326
AT 103, 101, 326
TC 82,981, 81990, 54,498
CT 0, 0, 56,795
AG 82,867, 82,211, 54,245
GA 0, 0, 56,516
TG 18,914 18,756 12,477
GT 0, 0, 12,787
AC 19,103, 18,743, 12,339
CA 0, 0, 12,890
GG 130,797,130,548,176,624
AA 112,329,112,612,157,793
TT 112,066,112,473,156,793
CC 131,411,131,312,177,411

My Son and I don't have any SNPs with CT,GA,GT or CA genotypes. Does anyone know what the reason is?

The SNPs with the alleles GC,TA and AT have the least number in all our results. Does anyone know anything about these autosomal SNPs?

[gman35]

no luck

I downloaded the program and eveytime I run it on my ancestory.com raw data.. it never completes just kinda hangs up. do I need something else to use it?? thanks, gary

[1798]

I downloaded the program and eveytime I run it on my ancestory.com raw data.. it never completes just kinda hangs up. do I need something else to use it?? thanks, gary

It didn't work for me the first time but I deleted it and downloaded it again. I uploaded my son's and my dna files and it worked fine. It took around two hours.The only downside is that when you close it you have to start the whole process again. I am interested in the minor alleles that my son and I share.

[1798]

This SNP rs8187858 TT shows 0.01% in the pie chart of human population variants so it must be rare enough. It must be a European variant, maybe Irish as well.

[felix]

This SNP rs8187858 TT shows 0.01% in the pie chart of human population variants so it must be rare enough. It must be a European variant, maybe Irish as well.

Please be cautious that the pie chart is based on OpenSNP dataset and not the entire human population. So, it may never be accurate but good enough to do basic calculations.

[1798]

Please be cautious that the pie chart is based on OpenSNP dataset and not the entire human population. So, it may never be accurate but good enough to do basic calculations.

I can check any of the SNPs out on the 1000g site but I am happy enough to be able to use the Autosomal Segment Analyzer.