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  #151  
Old 8th January 2018, 02:46 PM
Eric McGregor Eric McGregor is offline
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Join Date: Dec 2017
Posts: 1
HG19 vs HG38 genome and SNP refinement.

Can someone explain the difference in results by switching from HG19 to HG38 genomes? I know that a few of us have seen elimination of prior positive SNPs and also addition of many negative SNP's and some new positive SNPs as well. Some who have had the eliminated positive SNPs tested at yseq report they are still positive there.

Also is there anyway to tell who has been re-worked under HG38 vs HG19. Seems like it would be apples to oranges comparisons if some have reprocessed and others in a given project haven't.
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  #152  
Old 12th January 2018, 08:47 AM
Oscar Oscar is online now
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Join Date: Mar 2014
Posts: 5
hg38 conversion

How many of you are still waiting on an old Big Y test conversion from hg 19 to hg 38?
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  #153  
Old 12th January 2018, 09:53 AM
DmHagen DmHagen is offline
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Join Date: Dec 2012
Location: USA
Posts: 110
I'm still waiting for my father's conversion from an old Big Y test.
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  #154  
Old 12th January 2018, 10:11 AM
dtvmcdonald dtvmcdonald is offline
mtDNA: | Big Y Pending
 
Join Date: Mar 2011
Posts: 228
I'm still waiting on several conversions. After much prodding, I was informed that the lab analysis itself is being redone.

As to telling if the conversion is done: go to the person's BigY web page. If the page works, even if there are no matches, its done. If its not done, it won't work. There's
nothing there.

BAM files may still be there. If so, they are the old ones,
at least so far.
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